A type that stores the genome structure used in simulation. More...
#include <sim-operations.h>
Collaboration diagram for gsc_KnownGenome:
Data Fields | |
| unsigned int | n_markers |
| The total number of markers. More... | |
| char ** | marker_names |
| A vector of n_markers strings containing the names of markers, ordered according to their index in an AlleleMatrix. More... | |
| char *** | names_alphabetical |
| A vector of n_markers pointers to names in marker_names, ordered in alphabetical order of the names. More... | |
| unsigned int | n_maps |
| The number of recombination maps currently stored. More... | |
| gsc_MapID * | map_ids |
| A vector of n_maps identifiers for each of the recombination maps currently stored. More... | |
| gsc_RecombinationMap * | maps |
| A vector of n_maps recombination maps, to use for simulating meiosis. More... | |
Detailed Description
A type that stores the genome structure used in simulation.
Has short name: KnownGenome
Definition at line 760 of file sim-operations.h.
Field Documentation
◆ map_ids
| gsc_MapID* gsc_KnownGenome::map_ids |
A vector of n_maps identifiers for each of the recombination maps currently stored.
These IDs correspond to the map in the corresponding position in the vector maps.
Definition at line 769 of file sim-operations.h.
◆ maps
| gsc_RecombinationMap* gsc_KnownGenome::maps |
A vector of n_maps recombination maps, to use for simulating meiosis.
Definition at line 772 of file sim-operations.h.
◆ marker_names
| char** gsc_KnownGenome::marker_names |
A vector of n_markers strings containing the names of markers, ordered according to their index in an AlleleMatrix.
Definition at line 762 of file sim-operations.h.
◆ n_maps
| unsigned int gsc_KnownGenome::n_maps |
The number of recombination maps currently stored.
Definition at line 768 of file sim-operations.h.
◆ n_markers
| unsigned int gsc_KnownGenome::n_markers |
The total number of markers.
Definition at line 761 of file sim-operations.h.
◆ names_alphabetical
| char*** gsc_KnownGenome::names_alphabetical |
A vector of n_markers pointers to names in marker_names, ordered in alphabetical order of the names.
For speeding up functions involving loading new genetic maps, or observing genotypes at particular markers.
Definition at line 764 of file sim-operations.h.
The documentation for this struct was generated from the following file:
