genomicSimulation, C version

This project is a set of C functions that run stochastic simulations of genetics in breeding schemes.

All functions are located in sim-operations.c and its header file sim-operations.h. A Makefile for the gcc compiler is provided.

Latest updates can be found on the page linked here.

Guide

Documentation (generated with doxygen) is available at the GitHub pages site of the repository. Also available there are guides to setting up and simulating particular crossing designs, and lists of equivalent functions in the R and C versions of the package. The file sim.c in this repository provides a simplistic simulation template.

R package version

An R package allowing these functions to be called in R is also provided under the name genomicSimulation.

The paper https://doi.org/10.1093/g3journal/jkac216 introduces this tool.