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genomicSimulationC 0.3
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genomicSimulationC 0.3
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List of functions and data structures that have short names available. More...
List of functions and data structures that have short names available.
Everything in this library is prefixed with gsc_. It might however be more appealing to use the short names (without gsc_ prefix). Short names are provided (listed below) for all data structures and user-friendly functions.
Each function's documentation page will list its short name, if it has one. Some functions are exposed but are not given short names: they may be useful for expert users trying to do specific things, but otherwise you can leave them alone.
If, due to namespace collision issues, you do not wish to have the short names available, simply #define GSC_NO_SHORT_NAMES before importing genomicSimulationC.
| #define AlleleMatrix gsc_AlleleMatrix |
Definition at line 262 of file sim-operations.h.
| #define BASIC_OPT GSC_BASIC_OPT |
Definition at line 258 of file sim-operations.h.
| #define BidirectionalIterator gsc_BidirectionalIterator |
Definition at line 268 of file sim-operations.h.
| #define calculate_allele_counts gsc_calculate_allele_counts |
Definition at line 353 of file sim-operations.h.
| #define calculate_bvs gsc_calculate_bvs |
Definition at line 352 of file sim-operations.h.
| #define calculate_local_bvs gsc_calculate_local_bvs |
Definition at line 356 of file sim-operations.h.
| #define calculate_minimal_bv gsc_calculate_minimal_bv |
Definition at line 361 of file sim-operations.h.
| #define calculate_optimal_bv gsc_calculate_optimal_bv |
Definition at line 359 of file sim-operations.h.
| #define calculate_optimal_haplotype gsc_calculate_optimal_haplotype |
Definition at line 357 of file sim-operations.h.
| #define calculate_optimal_possible_bv gsc_calculate_optimal_possible_bv |
Definition at line 360 of file sim-operations.h.
| #define calculate_optimal_possible_haplotype gsc_calculate_optimal_possible_haplotype |
Definition at line 358 of file sim-operations.h.
| #define change_allele_symbol gsc_change_allele_symbol |
Definition at line 277 of file sim-operations.h.
| #define change_eff_set_centre_of_allele_count gsc_change_eff_set_centre_of_allele_count |
Definition at line 280 of file sim-operations.h.
| #define change_eff_set_centre_of_markers gsc_change_eff_set_centre_of_markers |
Definition at line 279 of file sim-operations.h.
| #define change_eff_set_centres_to_values gsc_change_eff_set_centres_to_values |
Definition at line 278 of file sim-operations.h.
| #define change_label_by_amount gsc_change_label_by_amount |
Definition at line 274 of file sim-operations.h.
| #define change_label_default gsc_change_label_default |
Definition at line 272 of file sim-operations.h.
| #define change_label_to gsc_change_label_to |
Definition at line 273 of file sim-operations.h.
| #define change_label_to_values gsc_change_label_to_values |
Definition at line 275 of file sim-operations.h.
| #define change_names_to_values gsc_change_names_to_values |
Definition at line 276 of file sim-operations.h.
| #define clear_simdata gsc_clear_simdata |
Definition at line 283 of file sim-operations.h.
| #define combine_groups gsc_combine_groups |
Definition at line 324 of file sim-operations.h.
| #define create_bidirectional_iter gsc_create_bidirectional_iter |
Definition at line 292 of file sim-operations.h.
| #define create_empty_simdata gsc_create_empty_simdata |
Definition at line 282 of file sim-operations.h.
| #define create_evenlength_blocks_each_chr gsc_create_evenlength_blocks_each_chr |
Definition at line 354 of file sim-operations.h.
| #define create_new_label gsc_create_new_label |
Definition at line 271 of file sim-operations.h.
| #define create_randomaccess_iter gsc_create_randomaccess_iter |
Definition at line 293 of file sim-operations.h.
| #define DecimalMatrix gsc_DecimalMatrix |
Definition at line 256 of file sim-operations.h.
| #define define_matrix_format_details gsc_define_matrix_format_details |
Definition at line 290 of file sim-operations.h.
| #define delete_bidirectional_iter gsc_delete_bidirectional_iter |
Definition at line 370 of file sim-operations.h.
| #define delete_dmatrix gsc_delete_dmatrix |
Definition at line 367 of file sim-operations.h.
| #define delete_eff_set gsc_delete_eff_set |
Definition at line 366 of file sim-operations.h.
| #define delete_group gsc_delete_group |
Definition at line 363 of file sim-operations.h.
| #define delete_label gsc_delete_label |
Definition at line 364 of file sim-operations.h.
| #define delete_markerblocks gsc_delete_markerblocks |
Definition at line 369 of file sim-operations.h.
| #define delete_randomaccess_iter gsc_delete_randomaccess_iter |
Definition at line 371 of file sim-operations.h.
| #define delete_recombination_map gsc_delete_recombination_map |
Definition at line 365 of file sim-operations.h.
| #define delete_simdata gsc_delete_simdata |
Definition at line 368 of file sim-operations.h.
| #define DETECT_FILE_FORMAT GSC_DETECT_FILE_FORMAT |
Definition at line 288 of file sim-operations.h.
| #define EffectID gsc_EffectID |
Definition at line 247 of file sim-operations.h.
| #define FALSE GSC_FALSE |
Definition at line 240 of file sim-operations.h.
| #define FileFormatSpec gsc_FileFormatSpec |
Definition at line 289 of file sim-operations.h.
| #define generate_clone gsc_generate_clone |
Definition at line 340 of file sim-operations.h.
| #define generate_doubled_haploid gsc_generate_doubled_haploid |
Definition at line 339 of file sim-operations.h.
| #define generate_gamete gsc_generate_gamete |
Definition at line 338 of file sim-operations.h.
| #define GENOLEN_T GSC_GENOLEN_T |
Definition at line 230 of file sim-operations.h.
| #define GenoLocation gsc_GenoLocation |
Definition at line 265 of file sim-operations.h.
| #define GenOptions gsc_GenOptions |
Definition at line 257 of file sim-operations.h.
| #define get_alleles gsc_get_alleles |
Definition at line 301 of file sim-operations.h.
| #define get_existing_group_counts gsc_get_existing_group_counts |
Definition at line 313 of file sim-operations.h.
| #define get_existing_groups gsc_get_existing_groups |
Definition at line 312 of file sim-operations.h.
| #define get_first_parent gsc_get_first_parent |
Definition at line 302 of file sim-operations.h.
| #define get_group gsc_get_group |
Definition at line 305 of file sim-operations.h.
| #define get_group_bvs gsc_get_group_bvs |
Definition at line 319 of file sim-operations.h.
| #define get_group_genes gsc_get_group_genes |
Definition at line 318 of file sim-operations.h.
| #define get_group_ids gsc_get_group_ids |
Definition at line 316 of file sim-operations.h.
| #define get_group_indexes gsc_get_group_indexes |
Definition at line 317 of file sim-operations.h.
| #define get_group_names gsc_get_group_names |
Definition at line 315 of file sim-operations.h.
| #define get_group_parent_ids gsc_get_group_parent_ids |
Definition at line 321 of file sim-operations.h.
| #define get_group_parent_names gsc_get_group_parent_names |
Definition at line 320 of file sim-operations.h.
| #define get_group_pedigrees gsc_get_group_pedigrees |
Definition at line 322 of file sim-operations.h.
| #define get_group_size gsc_get_group_size |
Definition at line 314 of file sim-operations.h.
| #define get_id gsc_get_id |
Definition at line 304 of file sim-operations.h.
| #define get_index_of_eff_set gsc_get_index_of_eff_set |
Definition at line 309 of file sim-operations.h.
| #define get_index_of_genetic_marker gsc_get_index_of_genetic_marker |
Definition at line 311 of file sim-operations.h.
| #define get_index_of_label gsc_get_index_of_label |
Definition at line 308 of file sim-operations.h.
| #define get_index_of_map gsc_get_index_of_map |
Definition at line 310 of file sim-operations.h.
| #define get_label_value gsc_get_label_value |
Definition at line 307 of file sim-operations.h.
| #define get_name gsc_get_name |
Definition at line 299 of file sim-operations.h.
| #define get_second_parent gsc_get_second_parent |
Definition at line 303 of file sim-operations.h.
| #define GLOBALX_T GSC_GLOBALX_T |
Definition at line 232 of file sim-operations.h.
| #define GroupNum gsc_GroupNum |
Definition at line 245 of file sim-operations.h.
| #define ID_T GSC_ID_T |
Definition at line 233 of file sim-operations.h.
| #define INVALID_GENO_LOCATION GSC_INVALID_GENO_LOCATION |
Definition at line 266 of file sim-operations.h.
| #define IS_VALID_LOCATION GSC_IS_VALID_LOCATION |
Definition at line 267 of file sim-operations.h.
| #define KnownGenome gsc_KnownGenome |
Definition at line 260 of file sim-operations.h.
| #define LabelID gsc_LabelID |
Definition at line 249 of file sim-operations.h.
| #define load_blocks gsc_load_blocks |
Definition at line 355 of file sim-operations.h.
| #define load_data_files gsc_load_data_files |
Definition at line 287 of file sim-operations.h.
| #define load_effectfile gsc_load_effectfile |
Definition at line 285 of file sim-operations.h.
| #define load_genotypefile gsc_load_genotypefile |
Definition at line 286 of file sim-operations.h.
| #define load_mapfile gsc_load_mapfile |
Definition at line 284 of file sim-operations.h.
| #define LOCALX_T GSC_LOCALX_T |
Definition at line 231 of file sim-operations.h.
| #define LOGICVAL GSC_LOGICVAL |
Definition at line 234 of file sim-operations.h.
| #define make_all_unidirectional_crosses gsc_make_all_unidirectional_crosses |
Definition at line 347 of file sim-operations.h.
| #define make_clones gsc_make_clones |
Definition at line 346 of file sim-operations.h.
| #define make_crosses_from_file gsc_make_crosses_from_file |
Definition at line 348 of file sim-operations.h.
| #define make_double_crosses_from_file gsc_make_double_crosses_from_file |
Definition at line 349 of file sim-operations.h.
| #define make_doubled_haploids gsc_make_doubled_haploids |
Definition at line 345 of file sim-operations.h.
| #define make_group_from gsc_make_group_from |
Definition at line 325 of file sim-operations.h.
| #define make_random_crosses gsc_make_random_crosses |
Definition at line 341 of file sim-operations.h.
| #define make_random_crosses_between gsc_make_random_crosses_between |
Definition at line 342 of file sim-operations.h.
| #define make_targeted_crosses gsc_make_targeted_crosses |
Definition at line 343 of file sim-operations.h.
| #define MapID gsc_MapID |
Definition at line 251 of file sim-operations.h.
| #define MarkerBlocks gsc_MarkerBlocks |
Definition at line 259 of file sim-operations.h.
| #define MarkerEffects gsc_MarkerEffects |
Definition at line 263 of file sim-operations.h.
| #define MultiIDSet gsc_MultiIDSet |
Definition at line 253 of file sim-operations.h.
| #define NA GSC_NA |
Definition at line 241 of file sim-operations.h.
| #define NA_GENOLEN GSC_NA_GENOLEN |
Definition at line 235 of file sim-operations.h.
| #define NA_GLOBALX GSC_NA_GLOBALX |
Definition at line 237 of file sim-operations.h.
| #define NA_IDX GSC_NA_IDX |
Definition at line 238 of file sim-operations.h.
| #define NA_LOCALX GSC_NA_LOCALX |
Definition at line 236 of file sim-operations.h.
| #define next_backwards gsc_next_backwards |
Definition at line 297 of file sim-operations.h.
| #define next_forwards gsc_next_forwards |
Definition at line 296 of file sim-operations.h.
| #define next_get_nth gsc_next_get_nth |
Definition at line 298 of file sim-operations.h.
| #define NO_EFFECTSET GSC_NO_EFFECTSET |
Definition at line 248 of file sim-operations.h.
| #define NO_GROUP GSC_NO_GROUP |
Definition at line 246 of file sim-operations.h.
| #define NO_LABEL GSC_NO_LABEL |
Definition at line 250 of file sim-operations.h.
| #define NO_MAP GSC_NO_MAP |
Definition at line 252 of file sim-operations.h.
| #define NO_PEDIGREE GSC_NO_PEDIGREE |
Definition at line 244 of file sim-operations.h.
| #define PedigreeID gsc_PedigreeID |
Definition at line 243 of file sim-operations.h.
| #define RandomAccessIterator gsc_RandomAccessIterator |
Definition at line 269 of file sim-operations.h.
| #define RecombinationMap gsc_RecombinationMap |
Definition at line 261 of file sim-operations.h.
| #define save_allele_counts gsc_save_allele_counts |
Definition at line 375 of file sim-operations.h.
| #define save_bvs gsc_save_bvs |
Definition at line 377 of file sim-operations.h.
| #define save_genotypes gsc_save_genotypes |
Definition at line 374 of file sim-operations.h.
| #define save_local_bvs gsc_save_local_bvs |
Definition at line 378 of file sim-operations.h.
| #define save_markerblocks gsc_save_markerblocks |
Definition at line 373 of file sim-operations.h.
| #define save_pedigrees gsc_save_pedigrees |
Definition at line 376 of file sim-operations.h.
| #define self_n_times gsc_self_n_times |
Definition at line 344 of file sim-operations.h.
| #define set_bidirectional_iter_to_end gsc_set_bidirectional_iter_to_end |
Definition at line 295 of file sim-operations.h.
| #define set_bidirectional_iter_to_start gsc_set_bidirectional_iter_to_start |
Definition at line 294 of file sim-operations.h.
| #define set_group gsc_set_group |
Definition at line 306 of file sim-operations.h.
| #define set_name gsc_set_name |
Definition at line 300 of file sim-operations.h.
| #define SimData gsc_SimData |
Definition at line 264 of file sim-operations.h.
| #define split_by_bv gsc_split_by_bv |
Definition at line 351 of file sim-operations.h.
| #define split_by_label_range gsc_split_by_label_range |
Definition at line 327 of file sim-operations.h.
| #define split_by_label_value gsc_split_by_label_value |
Definition at line 326 of file sim-operations.h.
| #define split_by_probabilities gsc_split_by_probabilities |
Definition at line 336 of file sim-operations.h.
| #define split_evenly_into_n gsc_split_evenly_into_n |
Definition at line 332 of file sim-operations.h.
| #define split_evenly_into_two gsc_split_evenly_into_two |
Definition at line 331 of file sim-operations.h.
| #define split_into_buckets gsc_split_into_buckets |
Definition at line 333 of file sim-operations.h.
| #define split_into_families gsc_split_into_families |
Definition at line 329 of file sim-operations.h.
| #define split_into_halfsib_families gsc_split_into_halfsib_families |
Definition at line 330 of file sim-operations.h.
| #define split_into_individuals gsc_split_into_individuals |
Definition at line 328 of file sim-operations.h.
| #define split_randomly_into_n gsc_split_randomly_into_n |
Definition at line 335 of file sim-operations.h.
| #define split_randomly_into_two gsc_split_randomly_into_two |
Definition at line 334 of file sim-operations.h.
| #define TableSize gsc_TableSize |
Definition at line 255 of file sim-operations.h.
| #define TRUE GSC_TRUE |
Definition at line 239 of file sim-operations.h.
1.9.3
